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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3633176_3635044_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3633176 - 3635044
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
TCGTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTTTGTTATCG
Flanking Amino Acid:
GGSQDMQQKRVLLLTVPGME
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85
0.79
0.7
84.6
30.4
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
48.6
-0.2
2.3
62.15
46.1

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544