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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3635131_3635515_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3635131 - 3635515
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAATC
5'SS Class:
major
3'SS Sequence:
CCTTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGCTTATAAAC
Flanking Amino Acid:
LSKQGWDTKKTGSSRPKSCE
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
75
35.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.3
0.64
0.8
76.4
32.2
Minor 5ss
31.2
-2.1
3.3
42.3
44.8
Minor BPS
48.8
-0.1
1.7
61.53
37.5

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544