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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3635560_3635815_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3635560 - 3635815
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTCCTTTATTT
Flanking Amino Acid:
RPKSCEVPGINIFPSADQEN
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.3
0.61
0.8
76.9
30.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
62.4
0.47
1.6
76.8
40.5

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544
ENSAPLT00000035958
3604668 - 3649211
44544