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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3636037_3638748_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3636037 - 3638748
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCACTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTGTTCCTCACT
Flanking Amino Acid:
THLGISTASQGMTTTPAPSQ
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.4
35.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
69.8
0.45
1
65.6
35
Minor 5ss
37.8
-1.4
3
40.6
45.1
Minor BPS
55.4
0.25
2.1
79.96
42.2

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544