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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3639672_3641828_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3639672 - 3641828
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TGTTGTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGGTCTTTAATT
Flanking Amino Acid:
QPSMGIDINSASLQQYRSNA
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
46.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.9
0.65
0.8
73.9
36.8
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
78
0.96
1.1
84.33
36.9

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544