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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3662624_3662829_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3662624 - 3662829
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ATGTGCTTATTC
Flanking Amino Acid:
LQHRPQVGYIRARFYEGPEV
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
86
0.81
0.8
77.7
36.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
51.3
0.02
2
64.22
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658