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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3663003_3663141_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3663003 - 3663141
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCACACAT
Flanking Amino Acid:
AVAEPGIQLKAVKSKTGPGE
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.54
0.9
74.7
35
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
46.6
-0.1
2.1
71.92
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658