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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3663637_3663847_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3663637 - 3663847
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CATCTTTTCACA
Flanking Amino Acid:
IDPNWIVLNQGMEIVQTMNS
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.7
0.69
0.8
75.4
32.7
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
49.8
-0
1.7
60.95
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658