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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3664027_3664421_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3664027 - 3664421
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AAGCTTGCAACT
Flanking Amino Acid:
VPNPGQEDSDGDGVGNLCEE
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.6
36.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
73.5
0.53
1
69.5
41.7
Minor 5ss
29
-2.4
3.5
38
46.9
Minor BPS
42.4
-0.4
2
56.62
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658