Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3667374_3667563_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3667374 - 3667563

Intron Length:

190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCGTTAC

U12 Branch Point Sequence:

TTCTCGTTACTT

Flanking Amino Acid:

LRCSDKKCRKDNCMTVPNSG

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

75.9

34.8

Major BPS

58.9

0.22

1.3

51.3

43.9

Major PPT

84.7

0.78

0.7

81.6

29.7

Minor 5ss

38.3

-1.3

3.1

50.9

45.7

Minor BPS

55.1

0.24

2.3

79.08

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010165

3662186 - 3677843

15658