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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3669571_3670774_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3669571 - 3670774
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CTTTCCACAACT
Flanking Amino Acid:
NGSQCTDINECNANPCFPKV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
64.8
0.54
1.9
85.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658