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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3670948_3673167_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3670948 - 3673167
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
CGGTCCTTAATG
Flanking Amino Acid:
KNAVMECDACGIHTEVSGPG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
82
0.72
0.8
74.6
36.4
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
69.4
0.47
1.4
63.76
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010165
3662186 - 3677843
15658