Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3698847_3704350_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3698847 - 3704350

Intron Length:

5504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TGTAACTTAAAC

Flanking Amino Acid:

QGPPGPIEAQVNGPDGILQN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.7

26.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

83.4

0.75

0.8

80.3

31.8

Minor 5ss

31.6

-2.1

2.6

37.4

Minor BPS

60.9

0.32

1.7

70.98

39.2

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305