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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3704494_3704917_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3704494 - 3704917

Intron Length:

424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTAATTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCGTTTTAATT

Flanking Amino Acid:

YTKDLPVHACSYCGIHDPAC

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.4

0.68

0.9

71.2

43.2

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

60.5

0.41

1.4

69.97

42.5

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305