Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3705008_3705564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3705008 - 3705564

Intron Length:

557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

CTGCATATAAAT

Flanking Amino Acid:

FCNGRGNTSGSHIVNHLVRA

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.8

1.08

0.7

84.9

Major BPS

81.9

0.79

0.8

81.9

Major PPT

78.4

0.64

0.9

72.2

37.8

Minor 5ss

-1.9

3.2

42.9

44.7

Minor BPS

44.7

-0.3

1.8

60.61

42.6

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305