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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3705733_3706617_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3705733 - 3706617

Intron Length:

885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCTAACTTAATA

Flanking Amino Acid:

KADSVVVLLCRQPCASQSSL

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

0.63

72.9

42.2

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

66.4

0.51

1.5

73.1

38.8

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305