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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3708194_3708369_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3708194 - 3708369

Intron Length:

176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGACA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

ATTCTGAGAACA

Flanking Amino Acid:

AYFTLPKTDSDMRLMQGDEI

Intron Amino Acid Position:

352

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

74.2

35.8

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

81.4

0.71

0.7

76.6

25.4

Minor 5ss

32.6

-2

3.1

41.2

44.8

Minor BPS

43.3

-0.5

2.2

61.04

38.4

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305