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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3708469_3708672_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

3708469 - 3708672

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CGAGGTTCTACAG|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TACTACTTAACG

Flanking Amino Acid:

GIGHVIKVPDNYGDEIAIEL

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.7

0.06

1.2

57.8

41.9

Major BPS

77.3

0.68

81.5

Major PPT

65.8

0.36

57.1

43.2

Minor 5ss

96.3

1.56

0.7

91.7

17.5

Minor BPS

69.2

0.47

1.6

69.79

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305