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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3710292_3710624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3710292 - 3710624

Intron Length:

333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGAAT

5'SS Class:

strong_major

3'SS Sequence:

CCTGTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTAGCC

Flanking Amino Acid:

ALHNQIRNMDSMPELQKLQQ

Intron Amino Acid Position:

569

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.5

0.8

87.7

27.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.9

0.79

0.8

79.6

32.3

Minor 5ss

33.9

-1.8

3.3

47.8

47.9

Minor BPS

57.7

0.22

77.12

38.3

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305