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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3710740_3710923_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3710740 - 3710923

Intron Length:

184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAAGTTC

5'SS Class:

major

3'SS Sequence:

GTTTTTGTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAA

U12 Branch Point Sequence:

ACTTGATTAATT

Flanking Amino Acid:

KRTAERELLMNADVICCTCV

Intron Amino Acid Position:

608

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

36.5

Major BPS

70.7

0.51

0.9

61.7

35.7

Major PPT

82.2

0.72

0.9

80.5

Minor 5ss

40.8

-1

3.4

55.1

44.8

Minor BPS

56.1

0.27

75.24

41.9

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305