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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3713620_3714609_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3713620 - 3714609

Intron Length:

990

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

GCTTCTGTGATT

Flanking Amino Acid:

SGSLHTKLYQEVEIASVDAF

Intron Amino Acid Position:

819

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

75.1

40.7

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

82.3

0.73

0.8

Minor 5ss

40.1

-1.1

3.2

57.4

46.9

Minor BPS

51.4

0.13

70.84

41.1

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305