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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3714753_3715397_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3714753 - 3715397

Intron Length:

645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTAA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTTCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAG

U12 Branch Point Sequence:

CTAATCTTAGTT

Flanking Amino Acid:

RRLNVALTRARYGVIIVGNP

Intron Amino Acid Position:

866

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

74.3

31.9

Major BPS

58.7

0.22

1.5

57.4

41.4

Major PPT

74.8

0.56

0.9

69.5

36.8

Minor 5ss

35.4

-1.7

3.3

46.2

49.1

Minor BPS

54.7

0.23

1.6

68.97

42.3

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305