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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3716377_3716528_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3716377 - 3716528

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGAAG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

GATGCTTGAAAT

Flanking Amino Acid:

PGSVYDRSSQGRPSNMYFQT

Intron Amino Acid Position:

952

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

39.3

Major BPS

71.6

0.54

33.1

Major PPT

73.4

0.53

0.8

64.8

30.7

Minor 5ss

-2.2

3.2

38.7

46.6

Minor BPS

0.14

1.7

68.31

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305

ENSAPLT00000009581

3698622 - 3717926

19305