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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3717167_3717831_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3717167 - 3717831

Intron Length:

665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TGTCATGCAACT

Flanking Amino Acid:

PGLSQPELSQVEEEELSLCG

Intron Amino Acid Position:

1079

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

72.5

0.56

1.2

39.9

Major PPT

86.9

0.83

0.8

84.6

30.4

Minor 5ss

38.7

-1.3

2.8

49.1

46.7

Minor BPS

44.2

-0.3

2.2

67.64

42.8

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022137

3698622 - 3717926

19305