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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3717717_3717831_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

3717717 - 3717831

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGGCAC

5'SS Class:

major

3'SS Sequence:

TTCTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TGTCATGCAACT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.2

56.9

42.2

Major BPS

72.5

0.56

1.2

39.9

Major PPT

86.9

0.83

0.8

84.6

30.4

Minor 5ss

-1.9

3.4

42.7

44.4

Minor BPS

44.2

-0.3

2.2

67.64

42.8

Associated Gene:

Gene:

UPF1

Ensembl Gene ID:

ENSAPLG00000009175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009581

3698622 - 3717926

19305