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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3727101_3727280_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3727101 - 3727280
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TCTCCCTCCACA
Flanking Amino Acid:
LTLMNIYWFLYIVLFVAKVL
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
61.4
44.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
78
0.63
0.7
72.1
26.1
Minor 5ss
28.3
-2.5
2.7
29.1
37
Minor BPS
53.8
0.11
2
69.11
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008945
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009302
3726230 - 3737859
11630