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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3728428_3728712_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3728428 - 3728712
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CACTCTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCTGCCCCACTC
Flanking Amino Acid:
LTLIAFSYAFRYHNVGILVL
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
67.4
0.39
0.9
61
34.7
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
39.7
-0.8
2
46.38
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008945
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009302
3726230 - 3737859
11630