Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3729576_3737613_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3729576 - 3737613

Intron Length:

8038

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTCGGTCCC

5'SS Class:

weak_major

3'SS Sequence:

CCTCTCCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTGCAT

U12 Branch Point Sequence:

CTGCCCTGCATG

Flanking Amino Acid:

RRAAARRLFRPFGEWCNLQP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.4

0.22

1.4

55.1

40.2

Major BPS

50.1

1.4

43.2

Major PPT

82.5

0.73

0.7

76.4

25.6

Minor 5ss

29.1

-2.4

2.9

28.8

35.5

Minor BPS

45.2

-0.5

49.28

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009302

3726230 - 3737859

11630