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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3740605_3740955_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3740605 - 3740955
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGATA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATTC
Flanking Amino Acid:
HPFIKEYQAKENDFDRLAMQ
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.7
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
34.8
-1.7
3.4
48.8
47
Minor BPS
51.7
0.03
1.6
61.72
38.7

Associated Gene:

Gene:
COPE
Ensembl Gene ID:
ENSAPLG00000008757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009123
3740557 - 3745212
4656