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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3741031_3741554_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3741031 - 3741554

Intron Length:

524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTCCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

ATTTCCCCATTT

Flanking Amino Acid:

LSQHLGKPPEVTNRYLSQLK

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

79.6

0.67

0.9

79.1

34.3

Minor 5ss

28.9

-2.4

3.3

37.6

47.1

Minor BPS

49.1

0.01

2.1

75.68

Associated Gene:

Gene:

COPE

Ensembl Gene ID:

ENSAPLG00000008757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009123

3740557 - 3745212

4656