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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3743393_3743858_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3743393 - 3743858

Intron Length:

466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTACCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTACAT

U12 Branch Point Sequence:

TTTCTGTTACAT

Flanking Amino Acid:

LLKLDRLDLARKELKKMQEQ

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.2

37.4

Major BPS

0.37

1.3

Major PPT

81.2

0.7

0.8

74.8

35.1

Minor 5ss

38.8

-1.3

2.9

46.2

Minor BPS

47.2

-0.1

2.3

74.05

42.7

Associated Gene:

Gene:

COPE

Ensembl Gene ID:

ENSAPLG00000008757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009123

3740557 - 3745212

4656