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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3743913_3744278_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3743913 - 3744278
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
ATGCCACTGAGA
Flanking Amino Acid:
RTLHQGESLECMAMMIQILL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
41.4
-0.6
2.1
52.3
39.1

Associated Gene:

Gene:
COPE
Ensembl Gene ID:
ENSAPLG00000008757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009123
3740557 - 3745212
4656