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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3744432_3744627_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3744432 - 3744627
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACGTTCATATGT
Flanking Amino Acid:
FAEYLSNESQRDAIVADLDK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
1
66.5
39.7
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
43.5
-0.4
2
58.2
45

Associated Gene:

Gene:
COPE
Ensembl Gene ID:
ENSAPLG00000008757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009123
3740557 - 3745212
4656