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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3744729_3745146_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3744729 - 3745146
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTCTCTCTAATA
Flanking Amino Acid:
VFLFRAYIAQRKYGVVLDEI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
76.6
0.6
0.8
73.8
29.8
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
65.5
0.48
1.6
75.53
36.4

Associated Gene:

Gene:
COPE
Ensembl Gene ID:
ENSAPLG00000008757
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009123
3740557 - 3745212
4656