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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3765670_3766619_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3765670 - 3766619
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TTCGCTTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
CTGTCCTGCACA
Flanking Amino Acid:
KERLKKMLSEGSVSEVQWEA
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
73.4
0.53
0.9
68.4
36.5
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
55.1
0.15
2
67.89
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008170
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008507
3759963 - 3786362
26400