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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3771636_3785538_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3771636 - 3785538
Intron Length:
13903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
ATCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
TCTGCCCTCACG
Flanking Amino Acid:
MGEQPIFSTRA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
83
0.74
0.8
77.3
30.7
Minor 5ss
35.6
-1.6
3.1
39.3
46
Minor BPS
47.8
-0.3
2.2
59.58
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008170
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008507
3759963 - 3786362
26400