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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_380573_382322_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
380573 - 382322
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGGAAT
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTTCCACACTC
Flanking Amino Acid:
CSRDYITSFLDSGMGLCLNN
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
72.4
38.9
Major BPS
79
0.72
1
69
38.9
Major PPT
86.2
0.82
0.7
80.2
31.9
Minor 5ss
35.2
-1.7
3.3
45.1
43.8
Minor BPS
47
-0.2
2.1
63.29
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002772
377747 - 398421
20675