About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3806835_3807425_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3806835 - 3807425
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
RNAQKNSPEYWFLSDEDSLE
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.8
85.3
28.2
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
SUGP2
Ensembl Gene ID:
ENSAPLG00000006469
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006704
3805669 - 3811413
5745