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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3807544_3808438_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3807544 - 3808438
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATTT
Flanking Amino Acid:
QNPPPDTQVTIPQRADRKIV
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.6
0.89
0.6
84.5
23.5
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
49.6
0.05
1.6
64.26
41

Associated Gene:

Gene:
SUGP2
Ensembl Gene ID:
ENSAPLG00000006469
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006704
3805669 - 3811413
5745