Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3817326_3817765_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3817326 - 3817765

Intron Length:

440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGCAG

5'SS Class:

major

3'SS Sequence:

TTTTTCCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTAACAT

U12 Branch Point Sequence:

CTAACATGAATC

Flanking Amino Acid:

REAVQQFESQGVDLSNIVKA

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.9

0.45

1.1

43.5

Major BPS

58.7

0.22

1.2

Major PPT

90.4

0.91

0.6

89.7

18.7

Minor 5ss

36.3

-1.6

3.2

46.8

48.6

Minor BPS

48.4

-0.1

1.8

58.42

40.1

Associated Gene:

Gene:

ARMC6

Ensembl Gene ID:

ENSAPLG00000006480

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006719

3816414 - 3823233

6820