Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3817849_3818547_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3817849 - 3818547

Intron Length:

699

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGACTA

5'SS Class:

major

3'SS Sequence:

TTTTGTCTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

CTTTCTTTTCTT

Flanking Amino Acid:

GQKQKHEILLTLDSLARCVA

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

64.4

41.6

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

86.8

0.83

0.7

85.5

29.2

Minor 5ss

34.3

-1.8

3.5

44.2

44.6

Minor BPS

43.4

-0.4

3.6

74.98

42.6

Associated Gene:

Gene:

ARMC6

Ensembl Gene ID:

ENSAPLG00000006480

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006719

3816414 - 3823233

6820