Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3820480_3821071_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3820480 - 3821071

Intron Length:

592

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCAGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTGCCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAG

U12 Branch Point Sequence:

TCTTCAGCAATT

Flanking Amino Acid:

AISHHLANPQICEQGCAALC

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.8

42.3

Major BPS

63.4

0.33

1.6

73.6

41.8

Major PPT

79.4

0.66

0.8

73.7

31.3

Minor 5ss

45.8

-0.4

2.6

60.7

Minor BPS

47.1

-0.1

2.4

73.15

Associated Gene:

Gene:

ARMC6

Ensembl Gene ID:

ENSAPLG00000006480

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006719

3816414 - 3823233

6820