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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_382804_386628_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
382804 - 386628
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTGCATCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAT
U12 Branch Point Sequence:
TGAGCATGAAGT
Flanking Amino Acid:
ANHDTAVLITSPPVRQILCA
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
57.9
0.2
1.4
62
44.2
Major PPT
62.8
0.29
1
59.4
41.7
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
45.6
-0.2
2.1
63.99
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002772
377747 - 398421
20675