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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3832898_3834525_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3832898 - 3834525
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TCACACTGAACA
Flanking Amino Acid:
PAASTHLPSEGVQEQKKVLN
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
54
0.12
1.7
64.21
41.2

Associated Gene:

Gene:
SLC25A42
Ensembl Gene ID:
ENSAPLG00000006582
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006825
3832775 - 3840106
7332