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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3834638_3836955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3834638 - 3836955
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATTGCAAGACC
Flanking Amino Acid:
PLDRTKIMFQVSSKRFSAKE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
45.4
-0.3
2.3
63.6
42.1

Associated Gene:

Gene:
SLC25A42
Ensembl Gene ID:
ENSAPLG00000006582
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006825
3832775 - 3840106
7332