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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3836982_3837812_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3836982 - 3837812
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCGTTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGACCTTTGATC
Flanking Amino Acid:
QVSSKRFSAKEAYRLIYRTY
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
72.5
0.51
0.9
65.3
36.2
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
60.8
0.32
1.2
64.47
34.9

Associated Gene:

Gene:
SLC25A42
Ensembl Gene ID:
ENSAPLG00000006582
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006825
3832775 - 3840106
7332