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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3837980_3838610_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3837980 - 3838610
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
CACCTTACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTCACCTTACTT
Flanking Amino Acid:
LLGSYYGFQGKALTPFPRFI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
69.4
0.44
0.8
66.6
33.9
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
58.6
0.35
1.7
71.97
45.5

Associated Gene:

Gene:
SLC25A42
Ensembl Gene ID:
ENSAPLG00000006582
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006825
3832775 - 3840106
7332