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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3839377_3839780_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3839377 - 3839780
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CCTCTGCTACTT
Flanking Amino Acid:
TYETLKKLHADHSGKSQPSP
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86.4
0.82
0.7
80
32
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
37.5
-0.8
2.3
52.59
43.2

Associated Gene:

Gene:
SLC25A42
Ensembl Gene ID:
ENSAPLG00000006582
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006825
3832775 - 3840106
7332