Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3865844_3866054_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3865844 - 3866054

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATTAT

U12 Branch Point Sequence:

AGGTCCCCAACA

Flanking Amino Acid:

RDMLCSSSVDGGADTLLKPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

75.3

34.6

Major BPS

64.6

0.36

1.1

55.7

39.9

Major PPT

82.1

0.72

0.8

76.4

32.3

Minor 5ss

30.4

-2.2

3.2

42.4

44.3

Minor BPS

51.1

0.03

1.9

64.15

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017141

3865621 - 3869863

4243