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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3866929_3867193_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3866929 - 3867193
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTCTCTCCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTGTCCTGATG
Flanking Amino Acid:
EVSALPATLDTLSIHQLAAQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.9
0.52
0.7
65.7
30.3
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
49.7
-0.1
1.8
62.31
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016423
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017141
3865621 - 3869863
4243